Mir-2-P3m

MirGeneDB ID

Lpo-Mir-2-P3m

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dpu-Mir-2-P3 Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668542.1: 87725-87786 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUGAAAGCAGUGAAUCAGGUUUUCAUCACUCACAAAGUGGUUGUUGUAUGCUUCUGCUACUGUUCAUAUCACAGCCAGCUUUGAUGAGUGAAGAAGCUACUGUUGACUUCAGAGUAGUGA

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Structure

        10         20         30          40        50         
GCCUGAAAGCAGUGAAU-   GU-    A       -     -|      U     CUUCUG 
                  CAG   UUUC UCACUCA CAAAG UGGUUGU GUAUG      C
                  GUC   GAAG AGUGAGU GUUUC ACCGACA UAUAC      U
AGUGAUGAGACUUCAGUU   AUC    A       A     G^      C     UUGUCA 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P3m_5p*

mirBase accession

None

Sequence

0- CUCACAAAGUGGUUGUUGUAUG -22

Get sequence

Mature sequence

Lpo-Mir-2-P3m_3p

mirBase accession

None

Sequence

38- UAUCACAGCCAGCUUUGAUGAGUG -62

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