MirGeneDB ID | Lpo-Mir-2-P4l |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-2-P1g
Lpo-Mir-2-P1h
Lpo-Mir-2-P1i
Lpo-Mir-2-P1j
Lpo-Mir-2-P1k
Lpo-Mir-2-P1l
Lpo-Mir-2-P1m
Lpo-Mir-2-P2g
Lpo-Mir-2-P2h
Lpo-Mir-2-P2j
Lpo-Mir-2-P2l
Lpo-Mir-2-P2m
Lpo-Mir-2-P3g
Lpo-Mir-2-P3h
Lpo-Mir-2-P3i
Lpo-Mir-2-P3k
Lpo-Mir-2-P3l
Lpo-Mir-2-P3m
Lpo-Mir-2-P4h
Lpo-Mir-2-P4i
Lpo-Mir-2-P4j
Lpo-Mir-2-P4k
|
Orthologues |
Aae-Mir-2-P4-v1
Aae-Mir-2-P4-v2
Aga-Mir-2-P4-v1
Aga-Mir-2-P4-v2
Bge-Mir-2-P4-v1
Bge-Mir-2-P4-v2
Cbr-Mir-2-o4
Cel-Mir-2-o4
Dma-Mir-2-P4
Dpu-Mir-2-P4
Gsp-Mir-2
Hme-Mir-2-P4
Isc-Mir-2-P4
Ple-Mir-2
Tca-Mir-2-P4-v1
Tca-Mir-2-P4-v2
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666934.1: 100459-100519 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGAGAUGAUGAACAGUCUCAUGACGCCAGUCGUCAGAGUGGCUGUGGUUCGUAAGGGUAACUUCGUAUCACAGCCAGCUUUGAUGAGUGGGGUUGUGGGCCUUACACCUUGGGUUACGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGAGAUGAUGAACAGU-- UG G G -| U UAAGG
CUCA AC CCA UCGUCAGAG UGGCUGUGGU CG G
GGGU UG GGU AGUAGUUUC ACCGACACUA GC U
UGCAUUGGGUUCCACAUUCC GU G G G^ U UUCAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-2-P4l_5p* |
mirBase accession | None |
Sequence |
0- GUCGUCAGAGUGGCUGUGGUUCG -23
Get sequence
|
Mature sequence |
Lpo-Mir-2-P4l_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGCCAGCUUUGAUGAGUG -61
Get sequence
|