Mir-2-P4-v2

MirGeneDB ID

Aae-Mir-2-P4-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-2b

Paralogues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aae-Mir-2-P2b Aae-Mir-2-P3 Aae-Mir-2-P4-v1 Aae-Mir-2-P5a Aae-Mir-2-P5b Aae-Mir-2-P7 Aae-Mir-2-P8

Orthologues

Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Aaeg_L3)

supercont1.268: 887257-887317 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4-v2)

Mir-2-P4-v1 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P4-v2 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P3 supercont1.268: 888595-888663 [-] Ensembl
Mir-2-P2b supercont1.268: 888744-888807 [-] Ensembl
Mir-2-P1-v1 supercont1.268: 889091-889155 [-] Ensembl
Mir-2-P1-v2 supercont1.268: 889091-889155 [-] Ensembl
Mir-71 supercont1.268: 889383-889449 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CGAUGCUCGCCAUUAAAGGGCGUAUUCUAGACUCUCAAAGUGGCUGUGAAAUGGUUUUAUUUUGCUCAUAUCACAGCCAGCUUUGAUGAGCUGGACUGCGCACCACGUUCAACGAAGUGAU

Get precursor sequence

Structure

        10         20        30         40         50          
CGAUGCUCGCCAUUAAAGG-     U     A   -      -|        AAUGGUUUUA 
                    GCGUA UCUAG CUC UCAAAG UGGCUGUGA          \
                    CGCGU AGGUC GAG AGUUUC ACCGACACU          U
UAGUGAAGCAACUUGCACCA     C     -   U      G^        AUACUCGUUU 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	To	To	To

Star sequence

Aae-Mir-2-P4-v2_5p*

mirBase accession

None

Sequence

0- ACUCUCAAAGUGGCUGUGAAA -21

Get sequence

Mature sequence

Aae-Mir-2-P4-v2_3p

mirBase accession

MIMAT0014306

Sequence

40- UCACAGCCAGCUUUGAUGAGC -61

Get sequence