MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2-P1l

Family name MIR-2 (all species)
Seed AUCACAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Aga-Mir-2-P1-v1  Aga-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dlo-Mir-2-P1-v1  Dlo-Mir-2-P1-v2  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Gpa-Mir-2-P1-v1  Gpa-Mir-2-P1-v2  Gsp-Mir-2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Ple-Mir-2  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666934.1: 91324-91386 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAUGGAAAGCUUAACGGUGACUUUCAGCCAUCAAAGAGACUGUGAAAUGUGUGUAUCUGUUUCAUAUAUCACAGCCACCUUUGAUGAGCUGGAAGCUAUUAGCAUUCACCGGGAUCACGU
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Structure
        10          20        30         40         50          
AGUGAUGGAAAGCUUAAC--    A        -        AGA-|     A   UGUGUAU 
                    GGUG CUUUCAGC CAUCAAAG    CUGUGA AUG       \
                    UUAU GAAGGUCG GUAGUUUC    GACACU UAU       C
UGCACUAGGGCCACUUACGA    C        A        CACC^     A   ACUUUGU 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-2-P1l_5p*
mirBase accessionNone
Sequence 
0- CCAUCAAAGAGACUGUGAAAUG -22
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Mature sequence

Lpo-Mir-2-P1l_3p
mirBase accessionNone
Sequence 
39- UAUCACAGCCACCUUUGAUGAGCU -63
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