Mir-2-P1

MirGeneDB ID

Dmo-Mir-2-P1

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-2c

Paralogues

Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Csc-Mir-2-P1n Csc-Mir-2-P1o Dan-Mir-2-P1-v1 Dan-Mir-2-P1-v2 Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gsp-Mir-2 Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Isc-Mir-2-P1 Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Ple-Mir-2 Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6540: 10568108-10568173 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P1)

Mir-2-P1 scaffold_6540: 10568108-10568173 [+] Ensembl
Mir-2-P2a scaffold_6540: 10568361-10568422 [+] Ensembl
Mir-2-P2b1 scaffold_6540: 10568529-10568588 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUGUACAUGCUUGGUCUUACUUUCAGUGUCAUCAAAAAGGGCUGAGAAUGAUAUUUCUGUAAUUGAAUUGUAUCACAGCCAGCUUUGAUGGGCACUGCGAAGGGCGAAGUAACAGUAACAUUAA

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Structure

        10        20          30         40        50        60    
GUGUGUACAUGCUUGGUCUUA-    -     -|       AAG     AGAA     UUUCUGUA 
                      CUUU CAGUG UCAUCAAA   GGCUG    UGAUA        \
                      GAAG GUCAC GGUAGUUU   CCGAC    ACUAU        A
AAUUACAAUGACAAUGAAGCGG    C     G^       CGA     ----     GUUAAGUU 
    120       110       100        90        80            70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-2-P1_5p*

mirBase accession

None

Sequence

0- UCAUCAAAAAGGGCUGAGAAUGAUA -25

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Mature sequence

Dmo-Mir-2-P1_3p

mirBase accession

MIMAT0008652

Sequence

44- UCACAGCCAGCUUUGAUGGGCA -66

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