Mir-2-P2a

MirGeneDB ID

Dmo-Mir-2-P2a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-13a

Paralogues

Dmo-Mir-2-P1 Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Aga-Mir-2-P2a Bge-Mir-2-P2a Dan-Mir-2-P2a Dlo-Mir-2-P2a Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2a Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2a Dya-Mir-2-P2a Gpa-Mir-2-P2a Gsp-Mir-2 Hme-Mir-2-P2a Ple-Mir-2 Tca-Mir-2-P2a

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6540: 10568361-10568422 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2a)

Mir-2-P1 scaffold_6540: 10568108-10568173 [+] Ensembl
Mir-2-P2a scaffold_6540: 10568361-10568422 [+] Ensembl
Mir-2-P2b1 scaffold_6540: 10568529-10568588 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

ACGAUCUCCGCCCAUUCAAUUCUUGCGUAACUCUUCAAGGGGUUGUGAAAUGUAGCCAUUAUCAAGUCAUAUCACAGCCAUUUUGAUGAGUUUCGUGUGAAUUGCUUUCAGCAUUGUCCCAU

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Structure

        10          20        30        40         50          
ACGAUCUCCGCCCAUUC--     U    U     U      -|       A   UAGCCAU 
                   AAUUC UGCG AACUC UCAAGG GGUUGUGA AUG       \
                   UUAAG GUGC UUGAG AGUUUU CCGACACU UAC       U
UACCCUGUUACGACUUUCG     U    U     U      A^       A   UGAACUA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-2-P2a_5p*

mirBase accession

None

Sequence

0- CUCUUCAAGGGGUUGUGAAAUG -22

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Mature sequence

Dmo-Mir-2-P2a_3p

mirBase accession

MIMAT0008661

Sequence

39- UAUCACAGCCAUUUUGAUGAGUU -62

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