MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-2-o2

Family name MIR-2 (all species)
Seed AUCACAG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-2-P1  Dpu-Mir-2-P2  Dpu-Mir-2-P3  Dpu-Mir-2-P4  Dpu-Mir-2-P5 
Orthologues Aae-Mir-2-P2b  Aga-Mir-2-P2a  Aga-Mir-2-P2b  Bge-Mir-2-P2a  Bge-Mir-2-P2b  Csc-Mir-2-P2n  Csc-Mir-2-P2o  Dan-Mir-2-P2a  Dan-Mir-2-P2b1  Dan-Mir-2-P2b2  Dlo-Mir-2-P2a  Dlo-Mir-2-P2b  Dma-Mir-2-o2  Dma-Mir-2-P2  Dme-Mir-2-P2a  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dmo-Mir-2-P2a  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dsi-Mir-2-P2a  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dya-Mir-2-P2a  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gsp-Mir-2  Hme-Mir-2-P2a  Hme-Mir-2-P2b  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Ple-Mir-2  Tca-Mir-2-P2a  Tca-Mir-2-P2b 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_77: 78818-78876 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUCAGAAUGCUUUGGGAGUUUUGAUUUCAGAUGAUUUUAUCUGUGAUGUGCUAAUUUUCAUGACAUAUCACAGACACAAUUAUCUGAACUUUUCAGCUCGUUAACAUCAUCCACAAC
Get precursor sequence
Structure
        10         20         30        40        50         
UCAUCAGAAUGCUUUGG-     UU-| U           UUA           CUAAUU 
                  GAGUU   GA UUCAGAUGAUU   UCUGUGAUGUG      \
                  CUCGA   UU AAGUCUAUUAA   AGACACUAUAC      U
CAACACCUACUACAAUUG     CUU^ C           CAC           AGUACU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-2-o2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAUGAUUUUAUCUGUGAUGUG -22
Get sequence
Mature sequence

Dpu-Mir-2-o2_3p
mirBase accessionNone
Sequence 
37- UAUCACAGACACAAUUAUCUGA -59
Get sequence