MirGeneDB ID | Bge-Mir-2-P2b |
Family name |
MIR-2 (all species) |
Seed |
AGUCAAA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P2a
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Bge-Mir-2-P4-v1
Bge-Mir-2-P4-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P2b
Aga-Mir-2-P2b
Dan-Mir-2-P2b1
Dan-Mir-2-P2b2
Dlo-Mir-2-P2b
Dma-Mir-2-o2
Dma-Mir-2-P2
Dme-Mir-2-P2b1
Dme-Mir-2-P2b2
Dmo-Mir-2-P2b1
Dmo-Mir-2-P2b2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Dsi-Mir-2-P2b1
Dsi-Mir-2-P2b2
Dya-Mir-2-P2b1
Dya-Mir-2-P2b2
Gpa-Mir-2-P2b
Gsp-Mir-2
Hme-Mir-2-P2b
Ple-Mir-2
Tca-Mir-2-P2b
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615436.1: 353858-353916 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGAAAUCAGCCUGUCCCUAUGUCCCAACAGUCAAAAUGACUGUGAUGUGUAGAUUUAAGUCAUAUCACAGCCAUUUUUGACGAGUUGGGCUGUAGGAUAUUACAUCAAUGAAACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAGAAAUCAGCCUGUC-- U A- -| A UAGAU
CCUAUG CCCAAC GUC AAAAUG CUGUGAUGUG \
GGAUGU GGGUUG CAG UUUUAC GACACUAUAC U
ACCAAAGUAACUACAUUAUA C AG U^ C UGAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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Mature sequence |
Bge-Mir-2-P2b_5p |
mirBase accession | None |
Sequence |
0- CAGUCAAAAUGACUGUGAUGUG -22
Get sequence
|
Co-mature sequence |
Bge-Mir-2-P2b_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCAUUUUUGACGAGUU -59
Get sequence
|