Mir-2-P2b1

MirGeneDB ID

Dmo-Mir-2-P2b1

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-13b-1

Paralogues

Dmo-Mir-2-P1 Dmo-Mir-2-P2a Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Aae-Mir-2-P2 Bge-Mir-2-P2 Dan-Mir-2-P2b1 Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b1 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2b1 Dya-Mir-2-P2b1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6540: 10568529-10568588 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2b1)

Mir-2-P1 scaffold_6540: 10568108-10568173 [+] Ensembl
Mir-2-P2a scaffold_6540: 10568361-10568422 [+] Ensembl
Mir-2-P2b1 scaffold_6540: 10568529-10568588 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCAUUCGAAUUGCAAUUUUCUUAUACCAUGUCGUUAAAAUGUCUGUGACCGUAUGUAUUCACUAUCAUAUCACAGCCAUUUUGACGAGUUUGGGUAAAGAAAUCUCAACAGAGCUCGCGU

Get precursor sequence

Structure

        10          20        30          40        50        60
GCAUUCGAAUUGCAAUU--     A    AUG--|          U      CCG    UAUU 
                   UUCUU UACC     UCGUUAAAAUG CUGUGA   UAUG    C
                   AAGAA AUGG     AGCAGUUUUAC GACACU   AUAC    A
UGCGCUCGAGACAACUCUA     -    GUUUG^          C      ---    UAUC 
.       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-2-P2b1_5p*

mirBase accession

None

Sequence

0- UCGUUAAAAUGUCUGUGACCGUAUG -25

Get sequence

Mature sequence

Dmo-Mir-2-P2b1_3p

mirBase accession

MIMAT0008636

Sequence

37- UAUCACAGCCAUUUUGACGAGUU -60

Get sequence