Mir-2-P3-v2

MirGeneDB ID

Bge-Mir-2-P3-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Bge-Mir-2-P2a Bge-Mir-2-P2b Bge-Mir-2-P3-v1 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Bge-Mir-2-P7

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Bger_2.0)

KZ615436.1: 353745-353804 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAACCAAACAUAAACUGCUUGGUGUGCUGCUCACAAAGCUGUUGUGAUGUGUCGAUUUGAGUUCAUAUCACAGCCAGCUUUGAUGAGCGGCACACUAAGAUGAACUACAGAACUUCAAC

Get precursor sequence

Structure

        10          20        30         40         50        
GAAACCAAACAUAAACUG--                -       -|        UGUCGAU 
                    CUUGGUGUGCUGCUCA CAAAGCU GUUGUGAUG       U
                    GAAUCACACGGCGAGU GUUUCGA CGACACUAU       U
CAACUUCAAGACAUCAAGUA                A       C^        ACUUGAG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Star sequence

Bge-Mir-2-P3-v2_5p*

mirBase accession

None

Sequence

0- CUCACAAAGCUGUUGUGAUG -20

Get sequence

Mature sequence

Bge-Mir-2-P3-v2_3p

mirBase accession

None

Sequence

38- UCACAGCCAGCUUUGAUGAGCG -60

Get sequence