MirGeneDB ID | Csc-Mir-2-P2o |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-2-P1n
Csc-Mir-2-P1o
Csc-Mir-2-P2n
Csc-Mir-2-P3n
Csc-Mir-2-P3o
Csc-Mir-2-P4n
Csc-Mir-2-P4o
|
Orthologues |
Dma-Mir-2-o2
Dma-Mir-2-P2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384652.1: 447782-447839 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGUACAGAAAAUUUGUAUGCAUCUCUUGGCCGUCAAUUUGACUGUGGUCUGUUUUUAUUUAAUCAUAUCACAGCCAUCUUGACGAGUACUGAGAUGUCAGGAAAUCAGCACUUUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGUACAGAAAAUUUGUAU- UUG -| UU A C UUUUU
GCAUCUC GC CGUCAA UG CUGUGGU UG A
UGUAGAG UG GCAGUU AC GACACUA AC U
CUCUUUCACGACUAAAGGAC UCA A^ CU C U UAAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Csc-Mir-2-P2o_5p* |
mirBase accession | None |
Sequence |
0- CCGUCAAUUUGACUGUGGUCUG -22
Get sequence
|
Mature sequence |
Csc-Mir-2-P2o_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAUCUUGACGAGU -58
Get sequence
|