MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-2-P1n

Family name MIR-2 (all species)
Seed AUCACAG
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-2-P1o  Csc-Mir-2-P2n  Csc-Mir-2-P2o  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Csc-Mir-2-P4n  Csc-Mir-2-P4o 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Aga-Mir-2-P1-v1  Aga-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dlo-Mir-2-P1-v1  Dlo-Mir-2-P1-v2  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Gpa-Mir-2-P1-v1  Gpa-Mir-2-P1-v2  Gsp-Mir-2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Ple-Mir-2  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Protostomia
Genome context
(GCF_000671375.1_CSC)		 NW_019384303.1: 1024581-1024642 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUGUACGAUCCCGAUUCCCAGCGAAGCCAUCAAAGUGGUCGUGAAAUGUGUGAUAAAUCUUACUCAUAUCACAGCCACCUUUGAUGAGCUAAACUGAGGAAACAUCCGAAAUUCACGAA
Get precursor sequence
Structure
        10         20         30          40        50         
UCAGUGUACGAUCCCGA-    -   CGA   -       -|    C    A   UGUGAUA 
                  UUCC CAG   AGC CAUCAAA GUGGU GUGA AUG       A
                  AAGG GUC   UCG GUAGUUU CACCG CACU UAC       A
AAGCACUUAAAGCCUACA    A   AAA   A       C^    A    A   UCAUUCU 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Star sequence

Csc-Mir-2-P1n_5p*
mirBase accessionNone
Sequence 
0- CAUCAAAGUGGUCGUGAAAUG -21
Get sequence
Mature sequence

Csc-Mir-2-P1n_3p
mirBase accessionNone
Sequence 
39- UAUCACAGCCACCUUUGAUGAGC -62
Get sequence