MirGeneDB ID | Dan-Mir-2-P7 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
dan-mir-11
|
Paralogues |
Dan-Mir-2-P1-v1
Dan-Mir-2-P1-v2
Dan-Mir-2-P2a
Dan-Mir-2-P2b1
Dan-Mir-2-P2b2
Dan-Mir-2-P3a-v1
Dan-Mir-2-P3a-v2
Dan-Mir-2-P3b
Dan-Mir-2-P4a-v1
Dan-Mir-2-P4a-v2
Dan-Mir-2-P4b-v1
Dan-Mir-2-P4b-v2
Dan-Mir-2-P5
Dan-Mir-2-P6a
Dan-Mir-2-P6b
Dan-Mir-2-P6c
Dan-Mir-2-P8
Dan-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P7
Aga-Mir-2-P7
Asu-Mir-2-o7a
Asu-Mir-2-o7b
Bge-Mir-2-P7
Dlo-Mir-2-P7
Dme-Mir-2-P7
Dmo-Mir-2-P7
Dsi-Mir-2-P7
Dya-Mir-2-P7
Gpa-Mir-2-P7
Gsp-Mir-2
Hme-Mir-2-P7
Ple-Mir-2
Tca-Mir-2-P7
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Dana_caf1) |
scaffold_13340: 5675694-5675758 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGUCAUCUCUAAUAUGAGGCGCACUUGCCAAGAACUCUCUCUGUGACUUGUGUCCUUUUUUUCGAAACUCACAUCACAGUCUGAGUUCUUGCUGAGAGCGGGAAUCCUCCAAUCGCAUCAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGUCAUCUCUAAUAUGAGG--| A GC UCU CU UCCUUUUU
CGC CUU CAAGAACUC CUGUGA UGUG \
GCG GAG GUUCUUGAG GACACU ACAC U
GGAACUACGCUAACCUCCUAAGG^ A UC UCU -- UCAAAGCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Dan-Mir-2-P7_5p* |
mirBase accession | None |
Sequence |
0- CAAGAACUCUCUCUGUGACUUGUG -24
Get sequence
|
Mature sequence |
Dan-Mir-2-P7_3p |
mirBase accession | MIMAT0008472 |
Sequence |
43- CAUCACAGUCUGAGUUCUUGCU -65
Get sequence
|