Mir-2-P8-v2

MirGeneDB ID

Dme-Mir-2-P8-v2

Family name

MIR-2 (all species)

Seed

UCACAGG

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-308

Paralogues

Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dme-Mir-2-P3a Dme-Mir-2-P3b Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dme-Mir-2-P5 Dme-Mir-2-P6a Dme-Mir-2-P6b Dme-Mir-2-P6c Dme-Mir-2-P7 Dme-Mir-2-P8-v1 Dme-Mir-2-P9-v1 Dme-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P8 Aga-Mir-2-P8 Asu-Mir-2-o8 Dan-Mir-2-P8 Dmo-Mir-2-P8 Dsi-Mir-2-P8 Dya-Mir-2-P8 Gpa-Mir-2-P8 Gsp-Mir-2 Hme-Mir-2-P8 Ple-Mir-2 Tca-Mir-2-P8

Node of Origin (locus)

Aparaglossata

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 14215801-14215863 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P8-v2)

Mir-2-P8-v2 2R: 14215801-14215863 [-] UCSC Ensembl
Mir-2-P8-v1 2R: 14215802-14215862 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGCGGGGUUAAUAACACGUCUCGACGCCUCGCAGUAUAUUUUUGUGUUUUGUUUCGUUUUGCAAUCCAAAUCACAGGAUUAUACUGUGAGAUGACCAGCGUGCCAGCAGCGAAAAGCGACU

Get precursor sequence

Structure

        10           20        30        40        50        60 
AUGGCGGGGUUAAUAAC---|  U  CGA  C           U       U   GUUUCGUU 
                    ACG CU   CG CUCGCAGUAUA UUUUGUG UUU        \
                    UGC GA   GU GAGUGUCAUAU AGGACAC AAA        U
UCAGCGAAAAGCGACGACCG^  -  CCA  A           U       U   CCUAACGU 
 120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-2-P8-v2_5p*

mirBase accession

MIMAT0020833

Sequence

0- UCGCAGUAUAUUUUUGUGUUUU -22

Get sequence

Mature sequence

Dme-Mir-2-P8-v2_3p

mirBase accession

MIMAT0000399

Sequence

41- AUCACAGGAUUAUACUGUGAGA -63

Get sequence

Proposed targets

microrna.org: MIMAT0000399
TargetScanFly: dme-miR-308