MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-3842

Family name MIR-3842 (all species)
Seed GGAGGAA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3842
Paralogues
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG3: 559294-559352 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3842)
Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2e LG3: 560954-561011 [+] Ensembl
Mir-2-P2f LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCGCCAUCUCGUCCCACAACCUAACAACAAGGAGGAAAAACGAGUCGGUCGGCAUGGCACUGAUGCGAACGCUUCGUUUUUAUCCUUGUUGUUUUAUCGUUGAAAAUGUGGAAAAAAG
Get precursor sequence
Structure
        10        20          30        40        50         
AGCGCCAUCUCGUCCCACAACCU--|          GG         U  G   GCAUGG 
                         AACAACAAGGA  AAAAACGAG CG UCG      C
                         UUGUUGUUCCU  UUUUUGCUU GC AGC      A
GAAAAAAGGUGUAAAAGUUGCUAUU^          A-         C  A   GUAGUC 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-3842_5p

mirBase accessionMIMAT0018728
Sequence
0- AGGAGGAAAAACGAGUCGGUCGG -23
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Co-mature sequence

Tca-Mir-3842_3p

mirBase accessionMIMAT0018729
Sequence
37- GAACGCUUCGUUUUUAUCCUUG -59
Get sequence