Mir-3-P1

MirGeneDB ID

Dme-Mir-3-P1

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-309

Paralogues

Dme-Mir-3-P2 Dme-Mir-3-P3

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aga-Mir-3-o1 Dan-Mir-3-P1 Dlo-Mir-3 Dma-Mir-3 Dmo-Mir-3-P1 Dpu-Mir-3 Dsi-Mir-3-P1 Dya-Mir-3-P1 Gpa-Mir-3

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 19661710-19661768 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P1)

Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGUCUUAAAGUUUGGAAUAGCAAUUAUACGACAAACCUUGUUCGGUUUUGCCAAUUUCCAAGCCAGCACUGGGUAAAGUUUGUCCUAUAAUCCCGAAACGACGACCAGCUAAUUGUG

Get precursor sequence

Structure

        10        20          30        40        50         
GAAGUCUUAAAGUUUGGAAUAGCA--|     C       C   UU    U   CCAAUU 
                          AUUAUA GACAAAC UUG  CGGU UUG      \
                          UAAUAU CUGUUUG AAU  GUCA GAC      U
GUGUUAAUCGACCAGCAGCAAAGCCC^     C       A   GG    C   CGAACC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-3-P1_5p*

mirBase accession

MIMAT0020835

Sequence

0- CGACAAACCUUGUUCGGUUUUG -22

Get sequence

Mature sequence

Dme-Mir-3-P1_3p

mirBase accession

MIMAT0000401

Sequence

37- GCACUGGGUAAAGUUUGUCCUA -59

Get sequence

Proposed targets

microrna.org: MIMAT0000401
TargetScanFly: dme-miR-309