Mir-3-P1

MirGeneDB ID

Dsi-Mir-3-P1

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-3

Paralogues

Dsi-Mir-3-P2 Dsi-Mir-3-P3

Orthologues

Dan-Mir-3-P1 Dma-Mir-3 Dme-Mir-3-P1 Dmo-Mir-3-P1 Dpu-Mir-3 Dya-Mir-3-P1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2R: 16151447-16151503 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P1)

Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P2 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P1 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P2 2R: 16151557-16151615 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUUGUGAACCACCAAAGGUCCCGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUCCAAUCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGGCCACAUCGUCGCUACUUCAAA

Get precursor sequence

Structure

        10          20        30        40        50        
AAUUGUGAACCACCAAA--|   CC    C         UC    G    U   UUCCA 
                   GGUC  GAUC UGGGAUGCA  UUGU CAGU AUG     \
                   CCGG  CUAG ACUCUGUGU  AACG GUCA UAC     A
AAACUUCAUCGCUGCUACA^   UC    A         GA    G    C   ACUCU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-3-P1_5p*

mirBase accession

None

Sequence

0- GGAUGCAUCUUGUGCAGUUAUG -22

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Mature sequence

Dsi-Mir-3-P1_3p

mirBase accession

MIMAT0008862

Sequence

35- UCACUGGGCAAAGUGUGUCUCA -57

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