MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-3841

Family name MIR-3841 (all species)
Seed AGUACGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3841
Paralogues
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG3: 15689576-15689634 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3841)
Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-P9a LG3: 15689817-15689876 [+] Ensembl
Mir-2-P5c LG3: 15689938-15689994 [+] Ensembl
Mir-279-P1c LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGUGCUCGCUCUUUUCGCAUUAUCUUUCGUGCGAUCUUUCCAUUCCUACUUGUUGUUUGAUAAGUAGUACGGAAUUAUCUCACAUUAGAUAUUGGGAGUUUUCUUCAACUAUUUUU
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Structure
        10          20        30        40        50         
UUUUGUGCUCGCUCUUU--| G  U     UUC   C   CU    AUUC     UGUUG 
                   UC CA UAUCU   GUG GAU  UUCC    CUACU     U
                   AG GU AUAGA   CAC CUA  AAGG    GAUGA     U
UUUUUAUCAACUUCUUUUG^ G  U     UUA   U   UU    CAU-     AUAGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3841_5p*

mirBase accessionMIMAT0018726
Sequence
0- CGUGCGAUCUUUCCAUUCCUACU -23
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Mature sequence

Tca-Mir-3841_3p

mirBase accessionMIMAT0018727
Sequence
37- UAGUACGGAAUUAUCUCACAUU -59
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