Mir-3-P13b

MirGeneDB ID

Tca-Mir-3-P13b

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

Paralogues

Tca-Mir-3-P4 Tca-Mir-3-P5 Tca-Mir-3-P6 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a

Orthologues

Dlo-Mir-3 Dma-Mir-3 Dpu-Mir-3 Gpa-Mir-3

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Pancrustacea

Genome context
(Tcas5.2)

LG2: 1141776-1141834 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P13b)

Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCAUCACAAUGUUUUCGAAAUUUCUGCCCGGUCUAUCUUUGUUUAGACUGAUAUUUAUUUAAUUAUCACUGGGCAAAGUGGAUCUUGCAGUCGUUUCUCCAGUCCACAUCUUCCGAA

Get precursor sequence

Structure

        10          20        30        40        50        60
UUCCAUCACAAUGUUUUC--|    UU    CC      U          AC   UAUUUA 
                    GAAAU  CUGC  GGUCUA CUUUGUUUAG  UGA      U
                    CUUUG  GACG  CUAGGU GAAACGGGUC  ACU      U
AAGCCUUCUACACCUGACCU^    CU    UU      -          --   AUUAAU 
       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-3-P13b_5p*

mirBase accession

None

Sequence

0- CGGUCUAUCUUUGUUUAGACUGA -23

Get sequence

Mature sequence

Tca-Mir-3-P13b_3p

mirBase accession

None

Sequence

37- UCACUGGGCAAAGUGGAUCUUG -59

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