Mir-3-P4

MirGeneDB ID

Tca-Mir-3-P4

Family name

MIR-3 (all species)

Seed

GAUGAAC

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-309a

Paralogues

Tca-Mir-3-P5 Tca-Mir-3-P6 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a Tca-Mir-3-P13b

Orthologues

Dlo-Mir-3 Dma-Mir-3 Dpu-Mir-3 Gpa-Mir-3

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Pancrustacea

Genome context
(Tcas5.2)

LG5: 7455958-7456014 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P4)

Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAACUUGGAGAAGAAAAACGCUAAUCUGUUAGAUGAACUCGACUCGGCUGAUGAUAAAAAAAACAUCACUGGGUUCAGUUUGUCCAAUGGUUUUAGCUAAAAGUCAUCGCUGAAAAA

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Structure

        10         20         30        40        50        
GAACUUGGAGAAGAAAAAC-     U-|    A  UG    C       C     AUAA 
                    GCUAA  CUGUU GA  AACU GACUCGG UGAUG    A
                    CGAUU  GGUAA CU  UUGA UUGGGUC ACUAC    A
AAAAAGUCGCUACUGAAAAU     UU^    C  GU    C       -     AAAA 
     110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-3-P4_5p

mirBase accession

MIMAT0018750

Sequence

0- AGAUGAACUCGACUCGGCUGAUG -23

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Star sequence

Tca-Mir-3-P4_3p*

mirBase accession

MIMAT0018751

Sequence

35- UCACUGGGUUCAGUUUGUCCAA -57

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