MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3-P9a

Family name MIR-3 (all species)
Seed CACUGGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dlo-Mir-3  Dma-Mir-3  Dpu-Mir-3  Gpa-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 LG2: 342886-342945 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P9a)		 Mir-11617-P1 LG2: 342479-342539 [-] Ensembl
Mir-11617-P2 LG2: 364058-364118 [-] Ensembl
Mir-3851-P9a LG2: 370015-370074 [-] Ensembl
Mir-3851-P4b LG2: 371022-371081 [+] Ensembl
Mir-11617-P3 LG2: 372276-372333 [+] Ensembl
Mir-11619-P3 LG2: 374318-374376 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAUACAUUUCUUUUCCGAAAUUGCUUCCAGGUCCACCUUUUGCUUUUGUUGAUAUUUAUUUAACUAUCACUGGGCAAGGUAGACCCUGAAGUUGUUUCUUAAAUCUACAAUUAAUAUC
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Structure
        10          20        30        40        50        60 
GAGAUACAUUUCUUUUCC--|    U     CA    C    UU     UU  U    UUUA 
                    GAAAU GCUUC  GGUC ACCU  UGCUU  GU GAUA    U
                    CUUUG UGAAG  CCAG UGGA  ACGGG  CA CUAU    U
CUAUAAUUAACAUCUAAAUU^    U     UC    A    --     U-  -    CAAU 
.       110       100        90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P9a_5p*
mirBase accessionNone
Sequence 
0- AGGUCCACCUUUUGCUUUUGUUGAUA -26
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Mature sequence

Tca-Mir-3-P9a_3p
mirBase accessionNone
Sequence 
38- UCACUGGGCAAGGUAGACCCUG -60
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