MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-11619-P3

Family name MIR-11619 (all species)
Seed GAAGCGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11619a-3
Paralogues Tca-Mir-11619-P1  Tca-Mir-11619-P2  Tca-Mir-11619-P4  Tca-Mir-11619-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG2: 374318-374376 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11619-P3)
Mir-11617-P1 LG2: 342479-342539 [-] Ensembl
Mir-11617-P2 LG2: 364058-364118 [-] Ensembl
Mir-3851-P9a LG2: 370015-370074 [-] Ensembl
Mir-3851-P4b LG2: 371022-371081 [+] Ensembl
Mir-11617-P3 LG2: 372276-372333 [+] Ensembl
Mir-11619-P3 LG2: 374318-374376 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAGCAAGCAGUAACUUUCGAACGGAACACGAAGUCUGUGAUAUUCUUCAUUUUAUAAUUUAACAAAUGAAGCGUCAUUGGCUUGGUUUUUCGUUCAACACCACUUCGUCCAACGUUC
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Structure
        10        20          30        40        50          
AACAGCAAGCAGUAACUUUC--|       C  G     U     AUU       UUAUAA 
                      GAACGGAA AC AAGUC GUGAU   CUUCAUU      \
                      CUUGCUUU UG UUCGG UACUG   GAAGUAA      U
CUUGCAACCUGCUUCACCACAA^       U  G     U     C--       ACAAUU 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11619-P3_5p*

mirBase accessionMIMAT0045515
Sequence
0- CGAAGUCUGUGAUAUUCUUCAUU -23
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Mature sequence

Tca-Mir-11619-P3_3p

mirBase accessionMIMAT0045516
Sequence
38- UGAAGCGUCAUUGGCUUGGUU -59
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