MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-11619-P2

Family name MIR-11619 (all species)
Seed GAAGAGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11619a-2
Paralogues Tca-Mir-11619-P1  Tca-Mir-11619-P3  Tca-Mir-11619-P4  Tca-Mir-11619-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
KQ972170: 29392-29450 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11619-P2)
Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAGCAAGCAGUAACUUUCGAACGGAACACGAAGUCUGUGAUAUUCUUCAUUUUAUAAGUUAACUAAUGAAGAGUCAUUGGCUUGGUUUUUCGUUCAACACCACUUCGUCCAACGUUC
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Structure
        10        20          30        40        50          
AACAGCAAGCAGUAACUUUC--|       C  G     U     AU        UUAUAA 
                      GAACGGAA AC AAGUC GUGAU  UCUUCAUU      \
                      CUUGCUUU UG UUCGG UACUG  AGAAGUAA      G
CUUGCAACCUGCUUCACCACAA^       U  G     U     --        UCAAUU 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11619-P2_5p*

mirBase accessionMIMAT0045515
Sequence
0- CGAAGUCUGUGAUAUUCUUCAUU -23
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Mature sequence

Tca-Mir-11619-P2_3p

mirBase accessionMIMAT0045558
Sequence
38- UGAAGAGUCAUUGGCUUGGUU -59
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