MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-11619-P4

Family name MIR-11619 (all species)
Seed UGAGGAG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11619e
Paralogues Tca-Mir-11619-P1  Tca-Mir-11619-P2  Tca-Mir-11619-P3  Tca-Mir-11619-P5 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG2: 1144051-1144110 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11619-P4)		 Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUAUCAAACAAAACUAUCGGAUGAGAGAUGAGAGUUUGCGAUAAUCUUCAUUUUAGAAUUUAACAAAUGAGGAGUCACAGACUUGAUUUUUCGCUCGAUUGUUCGACACCACUUUGAU
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Structure
        10          20        30        40        50        60 
UAAUAUCAAACAAAACU--|   GA        GA       C   AA         UAGAA 
                   AUCG  UGAGAGAU  GAGUUUG GAU  UCUUCAUUU     \
                   UAGC  GCUUUUUA  UUCAGAC CUG  AGGAGUAAA     U
UAGUUUCACCACAGCUUGU^   UC        G-       A   --         CAAUU 
.       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11619-P4_5p*
mirBase accessionMIMAT0045499
Sequence 
0- UGAGAGUUUGCGAUAAUCUUCAUUU -25
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Mature sequence

Tca-Mir-11619-P4_3p
mirBase accessionMIMAT0045500
Sequence 
38- AUGAGGAGUCACAGACUUGAUU -60
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