MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-3851-P5a

Family name MIR-3851 (all species)
Seed AGUACGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3851l-2
Paralogues Tca-Mir-3851-P1  Tca-Mir-3851-P2  Tca-Mir-3851-P3  Tca-Mir-3851-P4a  Tca-Mir-3851-P4b  Tca-Mir-3851-P4c  Tca-Mir-3851-P4d  Tca-Mir-3851-P5b  Tca-Mir-3851-P6  Tca-Mir-3851-P7  Tca-Mir-3851-P8a  Tca-Mir-3851-P8b  Tca-Mir-3851-P9a  Tca-Mir-3851-P9b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG2: 1141446-1141505 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3851-P5a)
Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUACGUUAAAUUUGAAUAAAUUUAAUGCUGGGUUGGCAUAAGGUGGUACCAUGUAACAUUUUAACCCAUAGUACGAUCCAUGCCGACUCAGUAAUAAAUUACAAUUCGCCAGCAAGUGAA
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Structure
        10          20        30        40        50          
UUACGUUAAAUUUGAAUA--|     A              AA   G    C   UAACAU 
                    AAUUUA UGCUGGGUUGGCAU  GGU GUAC AUG      \
                    UUAAAU AUGACUCAGCCGUA  CUA CAUG UAC      U
AAGUGAACGACCGCUUAACA^     A              C-   G    A   CCAAUU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3851-P5a_5p*

mirBase accessionMIMAT0045476
Sequence
0- GGUUGGCAUAAGGUGGUACCAUG -23
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Mature sequence

Tca-Mir-3851-P5a_3p

mirBase accessionMIMAT0045505
Sequence
38- UAGUACGAUCCAUGCCGACUCA -60
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