MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-11618-P4

Family name MIR-11618 (all species)
Seed AUACCGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11618a-4
Paralogues Tca-Mir-11618-P1  Tca-Mir-11618-P2  Tca-Mir-11618-P3a  Tca-Mir-11618-P3b  Tca-Mir-11618-P5  Tca-Mir-11618-P6  Tca-Mir-11618-P7  Tca-Mir-11618-P8 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG2: 1143177-1143235 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11618-P4)		 Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAACAUUUUUACAAAAUGUUUUCGAUGUAUAGUUAGCAUUGGUCGUCUCUAUGCUUUUUUAUGAUCAUAUACCGAUCGAUGCUCGCUUUAUUUCGAAUCACAACUGGAACGAAUAAAAA
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Structure
        10         20         30        40        50         
GAACAUUUUUACAAAAU-  U-|    U   U   U           UCUC    CUUUU 
                  GU  UUCGA GUA AGU AGCAUUGGUCG    UAUG     U
                  CA  AAGCU UAU UCG UCGUAGCUAGC    AUAC     U
AAAAAUAAGCAAGGUCAA  CU^    U   U   C           CAU-    UAGUA 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11618-P4_5p*
mirBase accessionMIMAT0045503
Sequence 
0- AGUUAGCAUUGGUCGUCUCUAUG -23
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Mature sequence

Tca-Mir-11618-P4_3p
mirBase accessionMIMAT0045490
Sequence 
37- UAUACCGAUCGAUGCUCGCUUU -59
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