MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-11617-P6b

Family name MIR-11617 (all species)
Seed UUGGCAU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11617f-2
Paralogues Tca-Mir-11617-P1  Tca-Mir-11617-P2  Tca-Mir-11617-P3  Tca-Mir-11617-P4  Tca-Mir-11617-P5  Tca-Mir-11617-P6a 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG2: 1142386-1142443 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11617-P6b)
Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUUUUUAUUAUCGAAAGUAAACUGGUAACUUGGCAUGGGUGGUACUAUAUGGAUCAUAGUAAUUAUAGUACUUUCUAUGGCAACUUAUUAGUAAAUUAAAGUUCACGAUGAACGAU
Get precursor sequence
Structure
        10        20          30        40        50        
UCAUUUUUAUUAUCGAAAGUAA--|       C   G      U         UGGAUC 
                        ACUGGUAA UUG CAUGGG GGUACUAUA      A
                        UGAUUAUU AAC GUAUCU UCAUGAUAU      U
UAGCAAGUAGCACUUGAAAUUAAA^       C   G      U         UAAUGA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11617-P6b_5p

mirBase accessionMIMAT0045600
Sequence
0- CUUGGCAUGGGUGGUACUAUA -21
Get sequence
Star sequence

Tca-Mir-11617-P6b_3p*

mirBase accessionNone
Sequence
37- UAGUACUUUCUAUGGCAACUU -58
Get sequence