MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-11621-P1

Family name MIR-11621 (all species)
Seed UAAAGCG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11621
Paralogues Tca-Mir-11621-P2a  Tca-Mir-11621-P2b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG2: 1146138-1146196 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11621-P1)		 Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGACGCAUCUUCGAUCAACUUUCCUUGAAAAUAAAGCGCAUUUGUCGUUGCAUUCUUAACAUAAAGGCAACGAUUCAGGUGCUUUUCUUUCAAUCAAAGUUAAUACUACCAGAUUUUGA
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Structure
        10          20        30        40        50         
CGACGCAUCUUCGAUCA--|    CC      AU       AUUU        AUUCUUA 
                   ACUUU  UUGAAA  AAAGCGC    GUCGUUGC       \
                   UGAAA  AACUUU  UUUCGUG    UAGCAACG       A
AGUUUUAGACCAUCAUAAU^    CU      CU       GACU        GAAAUAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11621-P1_5p
mirBase accessionMIMAT0045513
Sequence 
0- AUAAAGCGCAUUUGUCGUUGCA -22
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Co-mature sequence

Tca-Mir-11621-P1_3p
mirBase accessionMIMAT0045514
Sequence 
37- CAACGAUUCAGGUGCUUUUCUU -59
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