Mir-11621-P2a

MirGeneDB ID

Tca-Mir-11621-P2a

Family name

MIR-11621 (all species)

Seed

UAAAGCG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

Paralogues

Tca-Mir-11621-P1 Tca-Mir-11621-P2b

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

LG2: 1142245-1142303 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-11621-P2a)

Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGACGCAUCUUCGAUCAACUUUCCUUGAAAAUAAAGCGCAUUUGUCGUUGCAUCCUUAACAUAAAGGCAACGAUUCAGGUGCUUUUCUUUCAAUCAAAGUUAAUACUACCAGAUUUUGA

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Structure

        10          20        30        40        50         
CGACGCAUCUUCGAUCA--|    CC      AU       AUUU        AUCCUUA 
                   ACUUU  UUGAAA  AAAGCGC    GUCGUUGC       \
                   UGAAA  AACUUU  UUUCGUG    UAGCAACG       A
AGUUUUAGACCAUCAUAAU^    CU      CU       GACU        GAAAUAC 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-11621-P2a_5p

mirBase accession

None

Sequence

0- AUAAAGCGCAUUUGUCGUUGCA -22

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Co-mature sequence

Tca-Mir-11621-P2a_3p

mirBase accession

None

Sequence

37- CAACGAUUCAGGUGCUUUUCUU -59

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