MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-3851-P7

Family name MIR-3851 (all species)
Seed GUUGGCA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3851m-4
Paralogues Tca-Mir-3851-P1  Tca-Mir-3851-P2  Tca-Mir-3851-P3  Tca-Mir-3851-P4a  Tca-Mir-3851-P4b  Tca-Mir-3851-P4c  Tca-Mir-3851-P4d  Tca-Mir-3851-P5a  Tca-Mir-3851-P5b  Tca-Mir-3851-P6  Tca-Mir-3851-P8a  Tca-Mir-3851-P8b  Tca-Mir-3851-P9a  Tca-Mir-3851-P9b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
KQ971812: 13140-13199 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3851-P7)
Mir-11618-P2 KQ971812: 4386-4443 [-] Ensembl
Mir-3851-P5b KQ971812: 8277-8336 [-] Ensembl
Mir-3851-P7 KQ971812: 13140-13199 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUUAUUUUUUUAAUAAAUUUAGUACUGGGUUGGCACAGAGUAGUACUAUGUAAAAUUCUAUUUCAUAGUACGACCCGUGUCGGCCCAGUAAGAGACUUCAAUUUACCAGCAUGUCAU
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Structure
        10        20          30        40        50          
GUUUUUAUUUUUUUAAUAAA--|  AG              AGA  A        UAAAAU 
                      UUU  UACUGGGUUGGCAC   GU GUACUAUG      \
                      AGA  AUGACCCGGCUGUG   CA CAUGAUAC      U
UACUGUACGACCAUUUAACUUC^  GA              CC-  G        UUUAUC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-3851-P7_5p

mirBase accessionMIMAT0045466
Sequence
0- GGUUGGCACAGAGUAGUACUAUG -23
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Star sequence

Tca-Mir-3851-P7_3p*

mirBase accessionMIMAT0045585
Sequence
38- UAGUACGACCCGUGUCGGCCCA -60
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