MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-3-P12a

Family name MIR-3 (all species)
Seed CACUGGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dma-Mir-3  Dpu-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 KQ972170: 29279-29337 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P12a)		 Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUAUCACAAUUUUUUUGAAAUGUCUGUCAGGUCUACCUCUGCUUAAGUUGAUAUUUAUUUAAUUAUCACUGGGCAAGGUAGACUCUACAGCCGUUUGUUCAAUCUUCAAUCAACAGC
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Structure
        10          20        30        40        50        60
ACUUAUCACAAUUUUUUUG--|    U    CA         C      A  U    UUUA 
                     AAAUG CUGU  GGUCUACCU UGCUUA GU GAUA    U
                     UUUGC GACA  UCAGAUGGA ACGGGU CA CUAU    U
CGACAACUAACUUCUAACUUG^    C    UC         -      -  -    UAAU 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P12a_5p*
mirBase accessionNone
Sequence 
0- AGGUCUACCUCUGCUUAAGUUGAUA -25
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Mature sequence

Tca-Mir-3-P12a_3p
mirBase accessionNone
Sequence 
37- UCACUGGGCAAGGUAGACUCUA -59
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