MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-3-P6

Family name MIR-3 (all species)
Seed CACUGGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-309c
Paralogues Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Orthologues Dlo-Mir-3  Dma-Mir-3  Dpu-Mir-3  Gpa-Mir-3 
Node of Origin (locus) T. castaneum
Node of Origin (family) Pancrustacea
Genome context
(Tcas5.2)		 LG5: 7457335-7457391 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P6)		 Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACAUCCAAAAAAUUCCGGUACCACUUUUGGAUAAACCAUACUCAGUUGAUGUAUUAUAAAGCAUCACUGGGUAGAGUUUGUCCAAUAGUUUUACCACCAACCACAAUUUCGCAAC
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Structure
        10          20        30        40        50        
AAACAUCCAAAAAAUUCC--|   CC   U          CA        U    UAUU 
                    GGUA  ACU UUGGAUAAAC  UACUCAGU GAUG    A
                    CCAU  UGA AACCUGUUUG  AUGGGUCA CUAC    U
CAACGCUUUAACACCAACCA^   UU   U          AG        -    GAAA 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-3-P6_5p*
mirBase accessionMIMAT0045526
Sequence 
0- GGAUAAACCAUACUCAGUUGAUG -23
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Mature sequence

Tca-Mir-3-P6_3p
mirBase accessionMIMAT0045527
Sequence 
35- UCACUGGGUAGAGUUUGUCCAA -57
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