| MirGeneDB ID | Bge-Mir-3-P28b-v1 |
|---|
| Family name |
MIR-3 (all species) |
|---|
| Seed |
CACUGGG |
|---|
| Species |
Cockroach (Blattella germanica) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bge-Mir-3-P28a-v1
Bge-Mir-3-P28a-v2
Bge-Mir-3-P28b-v2
Bge-Mir-3-P29-v1
Bge-Mir-3-P29-v2
|
|---|
| Orthologues |
Dlo-Mir-3
Dma-Mir-3
Dpu-Mir-3
Gpa-Mir-3
|
|---|
| Node of Origin (locus) |
B. germanica
|
|---|
| Node of Origin (family) |
Pancrustacea
|
|---|
Genome context
(Bger_2.0) |
KZ614999.1: 53646-53704 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAGAGGGUCAUACGCACUAGUGGUGGGUGAUAGUGACUCCCCAAGUGAUGCUACAUUCUGAACGUAUCACUGGGAAGACAUUAUCGUUAGCUACAAGUGAAAAGCAACAAACUAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGAGAGGGUCAUACGC--| A GG A C A CUACAU
ACU GUGGU GUGAUAGUG CU CCCA GUGAUG U
UGA CAUCG UGCUAUUAC GA GGGU CACUAU C
AAAAUCAAACAACGAAAAG^ A AU A A - GCAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Bge-Mir-3-P28b-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUAGUGACUCCCCAAGUGAUG -22
Get sequence
|
|---|
| Mature sequence |
Bge-Mir-3-P28b-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCACUGGGAAGACAUUAUCGU -59
Get sequence
|
|---|
