MirGeneDB ID | Hme-Mir-3-P16 |
Family name |
MIR-3 (all species) |
Seed |
CACUGGG |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
|
Paralogues |
Hme-Mir-3-P14
Hme-Mir-3-P15
Hme-Mir-3-P17
Hme-Mir-3-P18
Hme-Mir-3-P19
Hme-Mir-3-P20
Hme-Mir-3-P21
Hme-Mir-3-P22
Hme-Mir-3-P23
Hme-Mir-3-P24
Hme-Mir-3-P25
Hme-Mir-3-P26
Hme-Mir-3-P27
|
Orthologues |
Dlo-Mir-3
Dma-Mir-3
Dpu-Mir-3
Gpa-Mir-3
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
Pancrustacea
|
Genome context (Hmel_1) |
HE671859: 113306-113364 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACGCAGCGCACAUUAUUACUGACAGGUUGAGCUGUUAAAUGCUUAGCAGGUAGUGUCAAAGUUCUAUCACUGGGUGUUUAACAGAUGUUACUGUUAGAAUUAAUCAACGCGUAAUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACGCAGCGCACAUUAUUA--| GUUGAG CA GUGUC
CUGACAG CUGUUAAAUGCUUAG GGUA A
GAUUGUC GACAAUUUGUGGGUC CUAU A
UGUUAAUGCGCAACUAAUUAA^ AUUGUA A- CUUGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Hme-Mir-3-P16_5p* |
mirBase accession | None |
Sequence |
0- AGCUGUUAAAUGCUUAGCAGGUA -23
Get sequence
|
Mature sequence |
Hme-Mir-3-P16_3p |
mirBase accession | None |
Sequence |
37- UCACUGGGUGUUUAACAGAUGU -59
Get sequence
|