MirGeneDB ID | Dpu-Mir-12608 |
Family name |
MIR-12608 (all species) |
Seed |
CACUGGG |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
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Paralogues |
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Orthologues |
Dma-Mir-12608
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Daphnia
|
Genome context (Daphnia_pulex.V1.0) |
CAJVNM010000013.1:1301350-1301500: 54-115 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUAUAAUUUGUUUAGUCGAGCCAAGCAUCAGGGGGGAACUUUACUCAGUUUGAUUCAUAUUAUAUGCAAAUCACUGGGUACGUUCGCCCUUGGUGAAUGAAUCUUAAACUUCUAUUUUGAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUAUAAUUUGUUUAGUC--| GC AG G UU UU CAUAUU
GA CA CAUCAGGGG GAAC UACUCAGU GAUU \
CU GU GUGGUUCCC CUUG AUGGGUCA CUAA A
CAAGUUUUAUCUUCAAAUU^ AA AA G C- -- ACGUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Dpu-Novel-6 is not in the Ensembl assembly but is in the latest assembly at Genbank (PA42 4.2) |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dpu-Mir-12608_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGGGGAACUUUACUCAGUUUGAUU -25
Get sequence
|
Mature sequence |
Dpu-Mir-12608_3p |
mirBase accession | None |
Sequence |
40- UCACUGGGUACGUUCGCCCUUG -62
Get sequence
|