| MirGeneDB ID | Ofu-Mir-279-o56 |
|---|
| Family name |
MIR-279 (all species) |
|---|
| Seed |
GACUAGA |
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| Species |
Tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-279-o53
Ofu-Mir-279-o54
Ofu-Mir-279-o55
Ofu-Mir-279-o57
|
|---|
| Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
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| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 23396616-23396670 [-]
|
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Precursor
(pre-Mir +30nt flank) |
AUUAGUAUUUUAUUUUUGUUGAUUUCCGAGAUGAUUGUGGGUCAAGUCCAUGUUUCAUGUUUCAUGACUAGAUCCACACUCAUCCUGGCGAUUUUCAUAGCAUCGCUGAUAGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUAGUAUUUUAUUUUU--|UU U A U A C UUUC
G GAUU CCG GAUGA UGUGGGUC AGUC AUG A
C UUAG GGU CUACU ACACCUAG UCAG UAC U
GACGAUAGUCGCUACGAUA^UU C C C A - UUUG
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ofu-Mir-279-o56_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AUGAUUGUGGGUCAAGUCCAUG -22
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-279-o56_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UGACUAGAUCCACACUCAUCC -55
Get sequence
|
|---|
