MirGeneDB 3.0
MirGeneDB ID

Ofu-Mir-279-o57

Family name MIR-279 (all species)
Seed GACUAGA
Species tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-279-o53  Ofu-Mir-279-o54  Ofu-Mir-279-o55  Ofu-Mir-279-o56 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)		 CAIIXF020000005.1: 28262369-28262425 [+]
Precursor
(pre-Mir +30nt flank)
GUUAUCCUUCACAUUAUUCUUCUGCUAGUUGUGGGUAUAUGUCACGUCAUGUGCUAUUUACCAUCAUGACUAGAUAUAUACUCAUUACUAUUGGAAGUGACUCUUCAGUUAGAUUAG
Get precursor sequence
Structure
        10          20        30        40        50        
GUUAUCCUUCACAUUAUU--|    GC    U             AC      UGCUAU 
                    CUUCU  UAGU GUGGGUAUAUGUC  GUCAUG      \
                    GAAGG  AUCA UACUCAUAUAUAG  CAGUAC      U
GAUUAGAUUGACUUCUCAGU^    UU    U             AU      UACCAU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ow Ow
Star sequence

Ofu-Mir-279-o57_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGGUAUAUGUCACGUCAUG -21
Get sequence
Mature sequence

Ofu-Mir-279-o57_3p
mirBase accessionNone
Sequence 
36- UGACUAGAUAUAUACUCAUUA -57
Get sequence