| MirGeneDB ID | Ofu-Mir-279-o53 |
|---|
| Family name |
MIR-279 (all species) |
|---|
| Seed |
GACUAGA |
|---|
| Species |
tubeworm (Owenia fusiformis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ofu-Mir-279-o54
Ofu-Mir-279-o55
Ofu-Mir-279-o56
Ofu-Mir-279-o57
|
|---|
| Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 28262820-28262871 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAUUGUGAGGUACAUGCGAGAUGUGUUGAUGUGUGUAUGUCAAGUCCAUGUGUAGCUCAUGACUAGAUAUACACUCAUUAACAAGUCUUAAGCUGUCAACAAUGACCUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGAUUGUGAGGUACAUGC--| G U A C UGU
GAGAU UGUUGAUG GUGUAUGUC AGUC AUG \
UUCUG ACAAUUAC CACAUAUAG UCAG UAC A
AGUCCAGUAACAACUGUCGAA^ A U A - UCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ofu-Mir-279-o53_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUGUGUGUAUGUCAAGUCCAUG -22
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-279-o53_3p |
| mirBase accession | None |
|---|
| Sequence |
31- UGACUAGAUAUACACUCAUUA -52
Get sequence
|
|---|
