MirGeneDB 3.0

MirGeneDB ID

Ofu-Mir-279-o53

Family name MIR-279 (all species)
Seed GACUAGA
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-279-o54  Ofu-Mir-279-o55  Ofu-Mir-279-o56  Ofu-Mir-279-o57 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)
CAIIXF020000005.1: 28262820-28262871 [+]
Precursor
(pre-Mir +30nt flank)
AAGAUUGUGAGGUACAUGCGAGAUGUGUUGAUGUGUGUAUGUCAAGUCCAUGUGUAGCUCAUGACUAGAUAUACACUCAUUAACAAGUCUUAAGCUGUCAACAAUGACCUGA
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Structure
        10          20        30        40        50      
AAGAUUGUGAGGUACAUGC--|    G        U         A    C   UGU 
                     GAGAU UGUUGAUG GUGUAUGUC AGUC AUG   \
                     UUCUG ACAAUUAC CACAUAUAG UCAG UAC   A
AGUCCAGUAACAACUGUCGAA^    A        U         A    -   UCG 
110       100        90        80        70         60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ow Ow
Star sequence

Ofu-Mir-279-o53_5p*

mirBase accessionNone
Sequence
0- AUGUGUGUAUGUCAAGUCCAUG -22
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Mature sequence

Ofu-Mir-279-o53_3p

mirBase accessionNone
Sequence
31- UGACUAGAUAUACACUCAUUA -52
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