MirGeneDB 3.0
MirGeneDB ID

Ofu-Mir-279-o55

Family name MIR-279 (all species)
Seed GACUAGA
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-279-o53  Ofu-Mir-279-o54  Ofu-Mir-279-o56  Ofu-Mir-279-o57 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)		 CAIIXF020000005.1: 28263348-28263402 [+]
Precursor
(pre-Mir +30nt flank)
CAUGUGGAUUCAUAUAUUGUGGUUACUUUGAUGUGUGUAUGUCGAGUCCAUGUUAUUUACGUCAUGACUAGAUAUACACUCAUUACUGUGGCUAACAGAACAAUUCAAUUCAAAC
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Structure
        10          20        30        40        50       
CAUGUGGAUUCAUAUAU-  -|      UU     U         G    C   UUAU 
                  UG UGGUUAC  UGAUG GUGUAUGUC AGUC AUG    U
                  AC AUCGGUG  AUUAC CACAUAUAG UCAG UAC    U
CAAACUUAACUUAACAAG  A^      UC     U         A    -   UGCA 
   110       100        90        80        70         60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
Ow Ow
Star sequence

Ofu-Mir-279-o55_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGUGUGUAUGUCGAGUCCAUG -22
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Mature sequence

Ofu-Mir-279-o55_3p
mirBase accessionNone
Sequence 
34- UGACUAGAUAUACACUCAUUA -55
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