MirGeneDB ID | Ofu-Mir-279-o54 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-279-o53
Ofu-Mir-279-o55
Ofu-Mir-279-o56
Ofu-Mir-279-o57
|
Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
O. fusiformis
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 28263645-28263699 [+]
|
Precursor (pre-Mir +30nt flank) |
AAGAUGUCUUGAUGAUUUAAGAUUACUUUAAUGUGUGUAUGUCGAGUCCAUGUACUUUACAUCAUGACUAGAUAUACACUCAUUACUGUGGUCUUUACAUCCACAUUUUUAUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGAUGUCUUGAUGAUUU--| UU U G C UACU
AAGAUUAC UAAUG GUGUAUGUC AGUC AUG U
UUCUGGUG AUUAC CACAUAUAG UCAG UAC U
UUAUAUUUUUACACCUACAU^ UC U A - UACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ofu-Mir-279-o54_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AUGUGUGUAUGUCGAGUCCAUG -22
Get sequence
|
Mature sequence |
Ofu-Mir-279-o54_3p |
mirBase accession | None |
Sequence |
34- UGACUAGAUAUACACUCAUUA -55
Get sequence
|