MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-279-o39

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o37  Efe-Mir-279-o38  Efe-Mir-279-o40  Efe-Mir-279-o41  Efe-Mir-279-o42  Efe-Mir-279-o43 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.229038: 770-830 [-]
Precursor
(pre-Mir +30nt flank)
GUGACGAUGACUUUUAGGAGCGGAGCAGUGGGUGGGUGUAUGUCUGGUCACGUGUUCUAUAUCGUAUCCGUGACUAGAUAUAUACUCAUCUACAGUUCCGUUCUAUUUAUUACAAAGAUCA
Get precursor sequence
Structure
        10         20        30        40        50        60
GUGACGAUGACUUUUAG-|        A                         UGUUCUA 
                  GAGCGGAGC GUGGGUGGGUGUAUGUCUGGUCACG       U
                  CUUGCCUUG CAUCUACUCAUAUAUAGAUCAGUGC       A
ACUAGAAACAUUAUUUAU^        A                         CUAUGCU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o39_5p*
mirBase accessionNone
Sequence 
0- GGUGGGUGUAUGUCUGGUCACG -22
Get sequence
Mature sequence

Efe-Mir-279-o39_3p
mirBase accessionNone
Sequence 
40- UGACUAGAUAUAUACUCAUCU -61
Get sequence