MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-279-o37

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o38  Efe-Mir-279-o39  Efe-Mir-279-o40  Efe-Mir-279-o41  Efe-Mir-279-o42  Efe-Mir-279-o43 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.179746: 5176-5236 [+]
Precursor
(pre-Mir +30nt flank)
AUGAUGACAGAUGCUUAGGUUACUUCGUUCGACGUGUGUGAAUCUCGUACGUGUCGUCGUUUGCUAUACAUGACUAGAUACACACUCGUCUACGGAGGUAACGAUUAUCCCGACAACUGGC
Get precursor sequence
Structure
        10         20         30        40        50        60 
AUGAUGACAGAUGCUUAG-       -|  UC    U     A    C  A    UCGUCGU 
                   GUUACUU CGU  GACG GUGUG AUCU GU CGUG       \
                   CAAUGGA GCA  CUGC CACAC UAGA CA GUAC       U
CGGUCAACAGCCCUAUUAG       G^  U-    U     A    U  -    AUAUCGU 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o37_5p* (predicted)
mirBase accessionNone
Sequence 
0- GACGUGUGUGAAUCUCGUACGUG -23
Get sequence
Mature sequence

Efe-Mir-279-o37_3p
mirBase accessionNone
Sequence 
40- UGACUAGAUACACACUCGUCU -61
Get sequence