MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-279-o42

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o37  Efe-Mir-279-o38  Efe-Mir-279-o39  Efe-Mir-279-o40  Efe-Mir-279-o41  Efe-Mir-279-o43 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.388011: 41-103 [+]
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNNNNNUUGGUUUCUUGCGAUGGGUGGGUGUCAGUCUAACCAUGUUUCAGAGAUUGUUAGUCAUGACUAGAUUUACACUCAUCUAUGGCGAAGAAACCGGAACUACUACAACGCC
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Structure
        10         20         30        40        50        60 
NNNNNNNNNNNNNNUUG-       -| G            C      AC    UUUCAGAG 
                  GUUUCUU GC AUGGGUGGGUGU AGUCUA  CAUG        \
                  CAAAGAA CG UAUCUACUCACA UUAGAU  GUAC        A
CCGCAACAUCAUCAAGGC       G^ G            U      CA    UGAUUGUU 
 120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o42_5p*
mirBase accessionNone
Sequence 
0- GGUGGGUGUCAGUCUAACCAUG -22
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Mature sequence

Efe-Mir-279-o42_3p
mirBase accessionNone
Sequence 
41- UGACUAGAUUUACACUCAUCUA -63
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