MirGeneDB ID | Dgr-Mir-279-o49 |
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Family name | MIR-279 (all species) |
Seed | GACUAGA |
Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
MiRBase ID | |
Paralogues | Dgr-Mir-279-o48 |
Orthologues | Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 |
Node of Origin (locus) | D. gyrociliatus |
Node of Origin (family) | Protostomia |
Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000005.1: 1338096-1338160 [+] |
Precursor (pre-Mir +30nt flank) | CGGCGCAGUUUACGUUCUGGCUAAGCGGAGAGUGGGUUGUCGGCCUGGUCGUGAAGAAAAUUCAUUGUACACAUGACUAGACCUACACUCAUUCCUCGUUUUUGCUCUUGUCGUCUUGUAAAAAAGet precursor sequence |
Structure | 10 20 30 40 50 60 CGGCGCAGUUUACGUUCU- U-| GA U C C AAGAAAAU GGC AAGCG GAGUGGGU GU GG CUGGUCGUG U UCG UUUGC CUUACUCA CA CC GAUCAGUAC C AAAAAAUGUUCUGCUGUUC UU^ UC - U A ACAUGUUA 120 110 100 90 80 70 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Dgr-Mir-279-o49_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUGGGUUGUCGGCCUGGUCGUG -23
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|
Mature sequence | Dgr-Mir-279-o49_3p (predicted) |
mirBase accession | None |
Sequence |
43- UGACUAGACCUACACUCAUUCC -65
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|