MirGeneDB 3.0

MirGeneDB ID

Dgr-Mir-279-o49

Family name MIR-279 (all species)
Seed GACUAGA
Species Dimorphilus gyrociliatus (Dimorphilus gyrociliatus)
MiRBase ID
Paralogues Dgr-Mir-279-o48 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) D. gyrociliatus
Node of Origin (family) Protostomia
Genome context
(GCA_904063045.1_Dgyrociliatus)
CAJFCJ010000005.1: 1338096-1338160 [+]
Precursor
(pre-Mir +30nt flank)
CGGCGCAGUUUACGUUCUGGCUAAGCGGAGAGUGGGUUGUCGGCCUGGUCGUGAAGAAAAUUCAUUGUACACAUGACUAGACCUACACUCAUUCCUCGUUUUUGCUCUUGUCGUCUUGUAAAAAA
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Structure
        10         20         30        40        50        60  
CGGCGCAGUUUACGUUCU-   U-|    GA        U  C  C         AAGAAAAU 
                   GGC  AAGCG  GAGUGGGU GU GG CUGGUCGUG        U
                   UCG  UUUGC  CUUACUCA CA CC GAUCAGUAC        C
AAAAAAUGUUCUGCUGUUC   UU^    UC        -  U  A         ACAUGUUA 
   120       110       100        90         80        70
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Dgr-Mir-279-o49_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUGGGUUGUCGGCCUGGUCGUG -23
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Mature sequence

Dgr-Mir-279-o49_3p (predicted)

mirBase accessionNone
Sequence
43- UGACUAGACCUACACUCAUUCC -65
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