MirGeneDB 3.0

MirGeneDB ID

Dgr-Mir-279-o48

Family name MIR-279 (all species)
Seed GACUAGA
Species Dimorphilus gyrociliatus (Dimorphilus gyrociliatus)
MiRBase ID
Paralogues Dgr-Mir-279-o49 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) D. gyrociliatus
Node of Origin (family) Protostomia
Genome context
(GCA_904063045.1_Dgyrociliatus)
CAJFCJ010000013.1: 1493147-1493208 [+]
Precursor
(pre-Mir +30nt flank)
UUGAUAGAGAGCUACACUGAUUUUCUCCGUUACGAGUGAAAGUCUAGAACAUGUUUUUAUAAAUAUUCAUGACUAGACUUUACACUCGUAAAUGGCGAAAUAUCAAAACGUUAGCAAACUGA
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Structure
        10        20          30         40        50        60
UUGAUAGAGAGCUACACU   -    U   -         -|        AA    UUUUUA 
                  GAU UUUC CCG UUACGAGUG AAAGUCUAG  CAUG      U
                  CUA AAAG GGU AAUGCUCAC UUUCAGAUC  GUAC      A
AGUCAAACGAUUGCAAAA   U    C   A         A^        A-    UUAUAA 
120       110       100        90        80         70
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU Unknown
MotifsNo
Star sequence

Dgr-Mir-279-o48_5p* (predicted)

mirBase accessionNone
Sequence
0- UACGAGUGAAAGUCUAGAACAUG -23
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Mature sequence

Dgr-Mir-279-o48_3p (predicted)

mirBase accessionNone
Sequence
39- UGACUAGACUUUACACUCGUAAA -62
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