MirGeneDB ID | Snu-Mir-279-o52 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Peanut worm (Sipunculus nudus) |
MiRBase ID |
|
Paralogues |
Snu-Mir-279-o50
Snu-Mir-279-o51
|
Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
S. nudus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049306.1: 43836958-43837018 [-]
|
Precursor (pre-Mir +30nt flank) |
CAUGGUAAUGAAGAUCGACCUGUUGUCUUUAGGUGAAUGUAUGUCUAGUCCAUGUGUAAAGAGAUUCAUGACUAGAUACACACUCAUCUACAGUGACAGGUCUGAACAGCAGAGAAGAUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAUGGUAAUGAAGAUCG---| U U A A C UGUAA
ACCUGUUG CU UAGGUGA UGU UGUCUAGUC AUG A
UGGACAGU GA AUCUACU ACA AUAGAUCAG UAC G
AGUAGAAGAGACGACAAGUC^ - C C C - UUAGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Snu-Mir-279-o52_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGUGAAUGUAUGUCUAGUCCAUG -24
Get sequence
|
Mature sequence |
Snu-Mir-279-o52_3p (predicted) |
mirBase accession | None |
Sequence |
38- UGACUAGAUACACACUCAUCUAC -61
Get sequence
|