MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-279-o51

Family name MIR-279 (all species)
Seed GACUAGA
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-279-o50  Snu-Mir-279-o52 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) S. nudus
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049310.1: 58913018-58913073 [+]
Precursor
(pre-Mir +30nt flank)
GUCGUUGAGGUUUUUACCGCUGGGACUAGGAUGGCUGUGUGUCUGGUCCAUGUGUUUCUAUAUCAUGACUAGAUCCACACUCAUCCCGGUCAGCGGGAUCACACGUGAUGACCAGC
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Structure
        10            20        30        40        50        
GUCGUUGAGGUUUUUAC----|   GG   UA     GC    UG       C   UGUUU 
                     CGCU  GAC  GGAUG  UGUG  UCUGGUC AUG     \
                     GCGA  CUG  CCUAC  ACAC  AGAUCAG UAC     C
CGACCAGUAGUGCACACUAGG^   --   GC     UC    CU       -   UAUAU 
    110       100          90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ph
Star sequence

Snu-Mir-279-o51_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGGCUGUGUGUCUGGUCCAUG -22
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Mature sequence

Snu-Mir-279-o51_3p
mirBase accessionNone
Sequence 
35- UGACUAGAUCCACACUCAUCC -56
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