Mir-279-o28

MirGeneDB ID

Pca-Mir-279-o28

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Penis worm (Priapulus caudatus)

MiRBase ID

Paralogues

Pca-Mir-279-o27 Pca-Mir-279-o29 Pca-Mir-279-o30 Pca-Mir-279-o31 Pca-Mir-279-o32 Pca-Mir-279-o33

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

P. caudatus

Node of Origin (family)

Protostomia

Genome context
(Priapulus_caudatus_gca000485595v2)

KQ716035.1: 12684-12743 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAACUUUUACGGGGAGACCCUGCCGAGGAUGAUUGUGCUUCUGGUACAUGUGCCUUUGAGAAUCAUGACUAGAUCCACACUCAUCCACGACGGGGUGGCAGAGCGACACAUUCUCAC

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Structure

        10          20        30        40        50          
AAGAAACUUUUACGGGGAG--|     C  A      U    CU      A    UGCCUU 
                     ACCCUG CG GGAUGA UGUG  UCUGGU CAUG      \
                     UGGGGC GC CCUACU ACAC  AGAUCA GUAC      U
CACUCUUACACAGCGAGACGG^     A  A      C    CU      -    UAAGAG 
.       110       100        90        80         70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Gi	In	To

Star sequence

Pca-Mir-279-o28_5p*

mirBase accession

None

Sequence

0- GAUGAUUGUGCUUCUGGUACAUG -23

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Mature sequence

Pca-Mir-279-o28_3p

mirBase accession

None

Sequence

38- UGACUAGAUCCACACUCAUCCA -60

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