MirGeneDB 3.0
MirGeneDB ID

Pca-Mir-279-o30

Family name MIR-279 (all species)
Seed GACUAGA
Species Penis worm (Priapulus caudatus)
MiRBase ID
Paralogues Pca-Mir-279-o27  Pca-Mir-279-o28  Pca-Mir-279-o29  Pca-Mir-279-o31  Pca-Mir-279-o32  Pca-Mir-279-o33 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) P. caudatus
Node of Origin (family) Protostomia
Genome context
(Priapulus_caudatus_gca000485595v2)		 KQ716014.1: 16868-16927 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAGCGCGGCUGCAGCCGGGUGUCCCGGUGAUGCGCUUGUGUCUCGGUCACAGAGCAAUCGACAUGUGACUAGAGUCAAGCUCAUCUGCCGGUCGUCGGCAGAACGUGACAGAUGCUGU
Get precursor sequence
Structure
        10        20             30         40        50         
CGCAGCGCGGCUGCAGCCGGG    -----     -|   C     UG   C       GAGCA 
                     UGUC     CCGGU GAUG GCUUG  UCU GGUCACA     A
                     ACGG     GGCCG CUAC CGAAC  AGA UCAGUGU     U
UGUCGUAGACAGUGCAAG---    CUGCU     U^   U     UG   -       ACAGC 
.       110          100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
Gi In To
Star sequence

Pca-Mir-279-o30_5p*
mirBase accessionNone
Sequence 
0- GAUGCGCUUGUGUCUCGGUCACA -23
Get sequence
Mature sequence

Pca-Mir-279-o30_3p
mirBase accessionNone
Sequence 
37- UGACUAGAGUCAAGCUCAUCUGC -60
Get sequence