MirGeneDB ID | Pca-Mir-279-o29 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Penis worm (Priapulus caudatus) |
MiRBase ID |
|
Paralogues |
Pca-Mir-279-o27
Pca-Mir-279-o28
Pca-Mir-279-o30
Pca-Mir-279-o31
Pca-Mir-279-o32
Pca-Mir-279-o33
|
Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
P. caudatus
|
Node of Origin (family) |
Protostomia
|
Genome context (Priapulus_caudatus_gca000485595v2) |
KQ716014.1: 17538-17596 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUACAACUGAAAUAACUGGGCAAUACCAUGGGUGAGUAGGCUACUGGUCCACGUUGUAGAUAAAUCGUGACUAGAGCCUUACUCAUCCUUUGGUAUAGUCUGAAAACAGCACGUGUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUACAACUGAAAUAACU- A U- -| A C UUGUA
GGGC AUACCA GGGUGAGU AGGCU CUGGUC ACG G
UCUG UAUGGU CCUACUCA UCCGA GAUCAG UGC A
UUAUGUGCACGACAAAAG A UU U^ - - UAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pca-Mir-279-o29_5p* |
mirBase accession | None |
Sequence |
0- GGUGAGUAGGCUACUGGUCCACG -23
Get sequence
|
Mature sequence |
Pca-Mir-279-o29_3p |
mirBase accession | None |
Sequence |
37- UGACUAGAGCCUUACUCAUCCU -59
Get sequence
|