MirGeneDB 3.0
MirGeneDB ID

Pca-Mir-279-o29

Family name MIR-279 (all species)
Seed GACUAGA
Species Penis worm (Priapulus caudatus)
MiRBase ID
Paralogues Pca-Mir-279-o27  Pca-Mir-279-o28  Pca-Mir-279-o30  Pca-Mir-279-o31  Pca-Mir-279-o32  Pca-Mir-279-o33 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) P. caudatus
Node of Origin (family) Protostomia
Genome context
(Priapulus_caudatus_gca000485595v2)		 KQ716014.1: 17538-17596 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACAACUGAAAUAACUGGGCAAUACCAUGGGUGAGUAGGCUACUGGUCCACGUUGUAGAUAAAUCGUGACUAGAGCCUUACUCAUCCUUUGGUAUAGUCUGAAAACAGCACGUGUAUU
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Structure
        10         20         30         40        50         
AUACAACUGAAAUAACU-    A      U-        -|    A      C   UUGUA 
                  GGGC AUACCA  GGGUGAGU AGGCU CUGGUC ACG     G
                  UCUG UAUGGU  CCUACUCA UCCGA GAUCAG UGC     A
UUAUGUGCACGACAAAAG    A      UU        U^    -      -   UAAAU 
       110       100        90        80         70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Pr Pr Pr
Star sequence

Pca-Mir-279-o29_5p*
mirBase accessionNone
Sequence 
0- GGUGAGUAGGCUACUGGUCCACG -23
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Mature sequence

Pca-Mir-279-o29_3p
mirBase accessionNone
Sequence 
37- UGACUAGAGCCUUACUCAUCCU -59
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